China Dairy ›› 2020, Vol. 0 ›› Issue (4): 79-83.
• QUALITY CONTROL • Previous Articles Next Articles
Application of Next Generation Sequencing in Dairy Industry
Lin Shaohua, Luo Hongxia
| [1] Bokulich N A, Lewis Z T,Boundy-Mills K,et al.A newperspective on microbial landscapes within food production[J]. Current Opinion in Biotechnology,2016,37(1):182-189. [2] Tamang J P,Watanabe K,Holzapfel W H.Review:diversity of microorganisms in global fermented foods andbeverages[J]. Frontiers in Microbiology,2016,7(1): 1-28. [3] Gibbons J G,Rinker D C.The genomics of microbialdomestication in the fermented food environment[J]. CurrentOpinion in Genetics and Development,2015,35:1-8. [4] Jünemann S,KleinbÖlting N,Jaenicke S,et al.Bioinformatics for NGS-based Metagenomics and the Application to Biogas Research[J]. Journal of Biotechnology,2017,261(4):10-23. [5] Lin C J,Bolsen K K,Brent B E,et al.Epiphyticlactic acid bacteria succession during the pre-ensilingand ensiling periods of alfalfa and maize[J]. Journalof Applied Microbiology,2010,73(5):375-387. [6] 陶莲,刁其玉. 青贮发酵对玉米秸秆品质及菌群构成的影响[J]. 动物营养学报,2016,28(1):198–207. [7] 胡宗福,常杰,萨仁呼,等. 基于宏基因组学技术检测全株玉米青贮期间和暴露空气后的微生物多样性[J]. 动物营养学报,2017,29(10):329-339. [8] Li L H,Sun Y M,Yuan Z H,et al.Effect of microalgae supplementation on the silage quality and anaerobic digestion performance of manyflower silvergrass[J].Bioresource Technology,2015,189(8):334-340 [9] Weimer P J.Redundancy,resilience,and host specificity of the ruminal microbiota:Implications for engineering improved ruminal fermentations[J]. Frontiers in Microbiology,2015,6(4):1-16. [10] 李子健,李大彪,高民,等. 不同生理阶段荷斯坦奶牛瘤胃细菌多样性研究[J]. 动物营养学报,2018,30(8):3017-3025. [11] Pitta D W,Pinchak E,Dowd S E,et al.Rumen bacterial diversity dynamics associated with changing from bermudagrass hay to grazed winter wheat diets[J]. Microbial Ecology,2010,59(3):511-522. [12] 李宏胜,郁杰,李新圃. 奶牛乳房炎病原菌区系分布及发病规律研究进展[J]. 动物医学进展,2004,26(6):146-149. [13] 袁永隆,张礼华,刘纯传,等. 我国奶牛乳房炎常见病原菌的区系调查[J]. 中国农业科学,1992,25(4):70-76. [14] Taponen S,Salmikivi L,Simojoki H,et al.Real time polymerase chain reaction-based identification of bacteriain milk samples from bovine clinical mastitis with no growth in conventional culturing[J]. Journal of Dairy Science,2009,92(6):2610-2617. [15] 曾学琴,柳陈坚,杨雪,等. 高通量测序法检测奶牛乳房炎关联微生物群落结构及多样性[J]. 浙江农业学报,2019,31(9):1437-1445. [16] Catozzi C,Bonastre A S,Francino O,et al.The microbiota of water buffalo milk during mastitis[J].PLoS One,2017,12(9):1-20. [17] Sun L,Han X,Li J,et al.Microbial community and its association with physicochemical factors during compost bedding for dairy cows[J]. Frontiers in Microbiology,2020,11(2):1-14. [18] 姚宇秀,陈媛,郭佩佩,等. IlluminaMiSeq高通量测序技术研究原料乳及环境中细菌多样性和致病菌的分布情况[J]. 中国食品学报,2019,19(1):249-254. [19] 张敏,张艳,黄丽丽,等. 基于16S rDNA高通量测序方法比较新疆西北部地区乳品中微生物的多样性[J]. 食品科学,2016,3(30):1-14. [20] Doyle C J,Gleeson D,O'toole P W,et al. High-throughput metataxonomic characterization of the raw milk microbiota identifies changes reflecting lactation stage and storage conditions[J]. International Journal of Food Microbiology,2017,255:1-6. [21] Christiansen P,Nielsen E W,Vogensen F K,et al.Heat resistance of Lactobacillusparacasei isolated from semi-hardcheese made of pasteurized milk[J]. International Dairy Journal 2006,16(10):1196-1204. [22] Ouwehand A C,Salvadori B B,Fonden R,et al.Health effects of probiotics and culture-containing dairy products in human[J]. Bulletin-International Dairy Federation,2003,380:4-19. [23] Quigley L,Mccarthy R,O'sullivan O,et al. The microbial content of raw and pasteurized cow milk as determined by molecular approaches[J]. Journal of Dairy Science,2013,96(8):4928-4937. [24] 丁瑞雪,耿丽娟,张铁华,等. 基于下一代测序技术分析巴氏杀菌乳中残留细菌在贮藏期间的动态变化[J]. 食品科学,2019,40(14):77-83. [25] 黄卫强,张家超,张和平. 应用宏基因组测序技术检测UHT牛乳中的微生物[J]. 中国乳品工业,2015,43(7):55-58. [26] 高洁,崔璐,袁昕蕾,等. 基于宏基因组学技术的开菲尔粒中细菌组成分析[J]. 中国食品学报,2016,16(6):225-230. [27] Nalbantoglu U,Cakar A,Dogan H,et al.Metagenomicanalysis of the microbial community in kefir grains[J]. Food Microbiology,2014,41(4):42-51. [28] 智楠楠,宗凯,杨捷琳,等. IlluminaMiseq平台深度测定酸奶中微生物多样性[J].食品工业科技,2016,37(24):78-82. [29] 田露,闵建红,张帝,等. 宏组学在发酵食品微生物群落研究中的应用进展[J]. 生物技术通报,2019,35(4):116-124. [30] Wolfe B E,Button J E,Santarelli M,et al.Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity[J]. Cell,2014,158(2):422-433. [31] Aldrete-Tapia A, Escobar-Ramirez M C, TamplinM L,et al. High- throughput sequencing of microbial communities in Poro cheese,an artisanal Mexican cheese[J]. Food Microbiology,2014,44(3):136-141. [32] Almeida M,Hébert A,Abraham A L,et al.Construction of adairy microbial genome catalog opens new perspectives for themetagenomic analysis of dairy fermented products[J]. BMCGenomics,2014,15(1):1101. [33] 呼斯楞. 哈萨克斯坦地区传统干酪中乳酸菌的分离鉴定及细菌多样性分析:[硕士论文][D].呼和浩特:内蒙古农业大学,2016. [34] 张峰. 浅谈婴幼儿配方乳粉的标准法规、检测技术及监管制度[J]. 中国食品药品监管,2018(2):30-34. [35] 王鸣秋,杨硕,刘艳,等. 基于16S rRNA高通量测序的婴幼儿食品中细菌多样性研究[J].现代食品科技,2020,36(2):1-8. [36] 李星科,李开雄,邹圣东. 酸马奶酒[J].中国乳业,2006(7):58-60. [37] 任志敏,陈忠军,孙子羽,等. 传统发酵奶酒的研究进展[J]. 中国酿造,2018,37(7):17-21. [38] 林少华,罗红霞,贾红亮,等. 下一代测序技术结合传统方法筛选及鉴定奶酒中曲霉菌[J]. 中国奶牛,2019(6):44-47. [39] 乌日汗,包连胜,包秀萍,等. 内蒙古科尔沁地区食疗用酸马奶发酵引子化学成分及细菌多样性分析[J]. 食品科学,2019(14):179-185. |
| No related articles found! |
|
||